STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_0791PFAM: lipopolysaccharide biosynthesis protein; KEGG: cau:Caur_3753 lipopolysaccharide biosynthesis protein. (653 aa)    
Predicted Functional Partners:
Cagg_0830
KEGG: cau:Caur_3791 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.987
Cagg_0143
KEGG: cau:Caur_3257 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.983
Cagg_1979
KEGG: cau:Caur_1504 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.983
Cagg_1637
KEGG: cau:Caur_1054 undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.982
Cagg_1545
Capsular exopolysaccharide family; KEGG: cau:Caur_2118 exopolysaccharide tyrosine-protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
 
0.955
Cagg_2479
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cau:Caur_1185 NADH dehydrogenase (quinone).
     
 0.893
Cagg_0792
KEGG: cau:Caur_3754 hypothetical protein.
 
     0.891
Cagg_2075
KEGG: cau:Caur_1480 ATPase involved in chromosome partitioning-like protein.
 
 
 0.845
Cagg_0790
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cau:Caur_3752 RND family efflux transporter MFP subunit.
 
     0.831
Cagg_1179
PFAM: lipopolysaccharide biosynthesis protein; KEGG: cau:Caur_0107 lipopolysaccharide biosynthesis protein.
 
 
 0.824
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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