STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_0806PFAM: Pyrrolo-quinoline quinone; KEGG: rrs:RoseRS_4237 pyrrolo-quinoline quinone. (577 aa)    
Predicted Functional Partners:
Cagg_0807
KEGG: cau:Caur_3768 hypothetical protein.
 
     0.840
Cagg_0804
KEGG: cau:Caur_3766 hypothetical protein.
 
     0.751
Cagg_0814
KEGG: cau:Caur_3775 hypothetical protein.
 
     0.682
Cagg_0811
KEGG: cau:Caur_3772 hypothetical protein.
 
     0.673
Cagg_2646
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: cau:Caur_0860 peptidylprolyl isomerase FKBP-type.
   
 
 0.663
Cagg_0810
KEGG: cau:Caur_3771 laminin G.
 
     0.653
Cagg_0802
PFAM: O-antigen polymerase; KEGG: cau:Caur_3764 O-antigen polymerase.
 
    0.618
Cagg_0813
PFAM: AMP-dependent synthetase and ligase; KEGG: cau:Caur_3774 AMP-dependent synthetase and ligase.
 
     0.589
Cagg_0796
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cau:Caur_3758 polysaccharide biosynthesis protein.
 
     0.570
Cagg_0803
KEGG: cau:Caur_3765 glycosyl hydrolase BNR repeat-containing glycosyl hydrolase.
 
     0.567
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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