STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_0809KEGG: cau:Caur_3770 laminin G, domain-containing 2. (209 aa)    
Predicted Functional Partners:
Cagg_0810
KEGG: cau:Caur_3771 laminin G.
       0.746
Cagg_0811
KEGG: cau:Caur_3772 hypothetical protein.
       0.746
Cagg_0812
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cau:Caur_3773 short-chain dehydrogenase/reductase SDR.
       0.746
Cagg_0813
PFAM: AMP-dependent synthetase and ligase; KEGG: cau:Caur_3774 AMP-dependent synthetase and ligase.
     
 0.678
Cagg_0816
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cau:Caur_3777 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
    0.618
Cagg_0814
KEGG: cau:Caur_3775 hypothetical protein.
     
 0.616
Cagg_0815
KEGG: cau:Caur_3776 hexapaptide repeat-containing transferase.
       0.613
Cagg_0553
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: cau:Caur_3534 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.485
Cagg_0808
KEGG: cau:Caur_3769 laminin G, domain-containing 2.
     
0.458
Cagg_3576
TIGRFAM: YD repeat protein; PFAM: cell wall hydrolase/autolysin; YD repeat-containing protein; KEGG: mba:Mbar_A3399 hypothetical protein.
  
  
 0.458
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.