Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cagg_0959TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: cau:Caur_3482 FeS assembly protein SufD. (404 aa)    
Predicted Functional Partners:
Cagg_0960
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: cau:Caur_3481 FeS assembly ATPase SufC.
 
 0.998
Cagg_0958
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.976
Cagg_0957
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: cau:Caur_3484 NifU family SUF system FeS assembly protein.
  
  
 0.909
Cagg_1728
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cau:Caur_1802 cysteine desulfurase family protein.
 
 
 0.900
Cagg_2765
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: cau:Caur_1748 aminotransferase class V.
 
 
 0.891
Cagg_0953
PFAM: nitrogen-fixing NifU domain protein; KEGG: cau:Caur_3488 NifU domain-containing protein.
  
  
 0.852
Cagg_2502
PFAM: aminotransferase class V; KEGG: cau:Caur_1659 aminotransferase class V.
 
 
 0.821
Cagg_0961
KEGG: cau:Caur_3480 transcriptional regulator, TrmB.
  
  
 0.778
Cagg_0606
PFAM: protein of unknown function DUF59; KEGG: cau:Caur_2798 hypothetical protein.
 
   
 0.718
Cagg_0956
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: cau:Caur_3485 FeS assembly protein SufB.
 
    
0.660
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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