STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Cooccurrence
Coexpression
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[Homology]
Score
Cagg_1024PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cau:Caur_3330 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)    
Predicted Functional Partners:
Cagg_1023
PFAM: ribonucleotide reductase; KEGG: cau:Caur_3331 ribonucleotide-diphosphate reductase subunit beta.
       0.821
Cagg_1619
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cau:Caur_1732 short-chain dehydrogenase/reductase SDR.
  
 
   0.772
Cagg_0812
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cau:Caur_3773 short-chain dehydrogenase/reductase SDR.
  
 
   0.763
Cagg_1022
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: cau:Caur_3332 heat repeat-containing PBS lyase.
 
     0.693
Cagg_1996
PFAM: lipolytic protein G-D-S-L family; KEGG: cau:Caur_0944 GDSL family lipase.
 
    0.469
Cagg_3394
PFAM: AMP-dependent synthetase and ligase; Enoyl-CoA hydratase/isomerase; Alcohol dehydrogenase GroES domain protein; KEGG: cau:Caur_0613 AMP-dependent synthetase and ligase.
  
  
 0.468
Cagg_1025
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cau:Caur_3329 peptidase M20.
  
    0.463
Cagg_1026
PFAM: putative RNA methylase; Methyltransferase type 11; KEGG: cau:Caur_3328 putative RNA methylase.
       0.424
Cagg_1027
KEGG: cau:Caur_3324 hypothetical protein.
       0.424
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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