STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_1069KEGG: rca:Rcas_3291 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Cagg_1071
PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_3293 hypothetical protein.
       0.796
Cagg_1070
PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_3292 hypothetical protein.
       0.789
Cagg_1072
KEGG: rca:Rcas_3294 hypothetical protein.
       0.789
Cagg_1068
KEGG: rca:Rcas_3290 hypothetical protein.
       0.782
Cagg_1073
KEGG: rca:Rcas_3295 hypothetical protein.
       0.750
Cagg_1066
Hypothetical protein.
       0.605
Cagg_1067
Hypothetical protein.
       0.605
Cagg_1074
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: cau:Caur_2270 regulatory protein LuxR.
       0.450
Cagg_1065
KEGG: rca:Rcas_3289 hypothetical protein.
       0.437
Cagg_1064
TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein DxTHG; KEGG: rca:Rcas_3288 CRISPR-associated TM1812 family protein.
       0.434
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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