STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_2000PFAM: sugar transferase; KEGG: cau:Caur_0948 undecaprenyl-phosphate galactose phosphotransferase. (215 aa)    
Predicted Functional Partners:
Cagg_1999
KEGG: cau:Caur_0947 hexapaptide repeat-containing transferase.
  
 0.977
Cagg_1545
Capsular exopolysaccharide family; KEGG: cau:Caur_2118 exopolysaccharide tyrosine-protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.852
Cagg_0791
PFAM: lipopolysaccharide biosynthesis protein; KEGG: cau:Caur_3753 lipopolysaccharide biosynthesis protein.
 
  
 0.774
Cagg_1180
TIGRFAM: capsular exopolysaccharide family; KEGG: cau:Caur_0108 exopolysaccharide tyrosine-protein kinase.
 
  
 0.724
Cagg_1997
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: cau:Caur_0945 polysaccharide biosynthesis protein CapD.
 
  
 0.651
Cagg_1998
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cau:Caur_0946 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.615
Cagg_1534
PFAM: glycosyl transferase group 1; KEGG: cau:Caur_2129 glycosyl transferase group 1.
 
    0.575
Cagg_1179
PFAM: lipopolysaccharide biosynthesis protein; KEGG: cau:Caur_0107 lipopolysaccharide biosynthesis protein.
 
  
 0.544
Cagg_2075
KEGG: cau:Caur_1480 ATPase involved in chromosome partitioning-like protein.
 
  
 0.514
Cagg_2001
KEGG: cau:Caur_0949 hypothetical protein.
       0.496
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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