STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_2010PFAM: beta-lactamase domain protein; KEGG: cau:Caur_1386 beta-lactamase domain-containing protein. (257 aa)    
Predicted Functional Partners:
Cagg_3509
PFAM: phosphonate metabolism PhnJ; KEGG: rrs:RoseRS_1588 phosphonate metabolism PhnJ.
  
 
 0.926
Cagg_2011
PFAM: glycosyl transferase group 1; KEGG: cau:Caur_1385 glycosyl transferase group 1.
       0.816
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
 
    
 0.739
Cagg_3769
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: cau:Caur_2955 riboflavin biosynthesis protein RibF; Belongs to the ribF family.
      0.629
Cagg_3507
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1586 ABC transporter related.
  
  
 0.513
Cagg_3506
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rrs:RoseRS_1585 phosphonate metabolism protein PhnM.
  
  
 0.461
Cagg_2009
PAS/PAC sensor signal transduction histidine kinase; KEGG: cau:Caur_1387 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.458
Cagg_1360
KEGG: cau:Caur_2497 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.421
Cagg_0145
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: cau:Caur_3258 glutamate synthase (ferredoxin).
     
 0.404
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.