STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_2012PFAM: initiation factor 2B related; KEGG: cau:Caur_1384 initiation factor 2B related; Belongs to the eIF-2B alpha/beta/delta subunits family. (310 aa)    
Predicted Functional Partners:
Cagg_0940
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: cau:Caur_2687 nucleotidyl transferase.
   
 0.804
Cagg_1840
PFAM: Nucleotidyl transferase; KEGG: cau:Caur_1942 nucleotidyl transferase.
   
 0.804
Cagg_2068
PFAM: transferase hexapeptide repeat containing protein; sugar transferase; Nucleotidyl transferase; KEGG: cau:Caur_1473 nucleotidyl transferase.
   
 0.804
Cagg_2148
TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cau:Caur_1216 glucose-1-phosphate cytidylyltransferase.
   
 0.804
Cagg_2516
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: cau:Caur_1799 nucleotidyl transferase.
   
 0.804
Cagg_3774
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: cau:Caur_2960 nucleotidyl transferase.
   
 0.804
Cagg_3402
PFAM: class II aldolase/adducin family protein; KEGG: cau:Caur_0590 class II aldolase/adducin family protein.
  
  
 0.589
hisS-2
KEGG: cau:Caur_1265 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase 2; histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
  
 
 0.567
Cagg_2013
Multi-sensor hybrid histidine kinase; KEGG: cau:Caur_1383 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.541
hisS
KEGG: cau:Caur_2942 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
   
 
 0.500
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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