STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_2017PFAM: NLP/P60 protein; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cau:Caur_1585 NLP/P60 protein. (536 aa)    
Predicted Functional Partners:
Cagg_2877
PFAM: Peptidase M23; KEGG: cau:Caur_0731 peptidase M23B.
 
  
 0.597
Cagg_1408
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cau:Caur_0781 peptidoglycan binding domain-containing protein.
 
   
 0.596
Cagg_3586
KEGG: cau:Caur_0345 hypothetical protein.
 
     0.578
Cagg_1707
PFAM: Lytic transglycosylase catalytic; KEGG: cau:Caur_0981 lytic transglycosylase catalytic.
 
  
 0.566
Cagg_2825
KEGG: cau:Caur_0708 hypothetical protein.
 
     0.552
Cagg_3222
PFAM: protein of unknown function RIO1; tyrosine protein kinase; PASTA domain containing protein; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: cau:Caur_0486 protein kinase.
 
   
 0.541
Cagg_2616
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: cau:Caur_1804 peptidoglycan glycosyltransferase.
 
  
 0.528
Cagg_1763
PFAM: Peptidase M23; KEGG: cau:Caur_1101 peptidase M23B.
 
  
 0.527
Cagg_0733
KEGG: cau:Caur_2669 hypothetical protein.
  
     0.524
Cagg_3576
TIGRFAM: YD repeat protein; PFAM: cell wall hydrolase/autolysin; YD repeat-containing protein; KEGG: mba:Mbar_A3399 hypothetical protein.
  
  
 0.516
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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