STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_2321PFAM: peptidase S16 lon domain protein; KEGG: cau:Caur_1253 peptidase S16 lon domain-containing protein. (222 aa)    
Predicted Functional Partners:
Cagg_0949
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: cau:Caur_3492 UBA/ThiF-type NAD/FAD binding protein.
    
 0.852
Cagg_2320
PFAM: protein of unknown function DUF503; KEGG: cau:Caur_1254 hypothetical protein.
 
     0.847
argJ-2
Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
       0.826
Cagg_2951
PFAM: SMC domain protein; KEGG: cau:Caur_2245 SMC domain-containing protein.
    
 0.757
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 0.744
Cagg_2323
PFAM: methyltransferase small; SMART: PUA domain containing protein; KEGG: cau:Caur_1251 PUA domain-containing protein.
       0.734
Cagg_2319
Magnesium chelatase; SMART: AAA ATPase; KEGG: cau:Caur_1255 magnesium chelatase.
       0.650
Cagg_0951
SMART: Mov34/MPN/PAD-1 family protein; KEGG: cau:Caur_3490 Mov34/MPN/PAD-1 family protein.
    
  0.542
Cagg_0668
PFAM: regulator of chromosome condensation RCC1; KEGG: rca:Rcas_0264 regulator of chromosome condensation RCC1.
    
  0.510
Cagg_0669
PFAM: regulator of chromosome condensation RCC1; KEGG: rca:Rcas_0264 regulator of chromosome condensation RCC1.
    
  0.510
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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