STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_2500PFAM: fumarate lyase; delta crystallin domain protein; KEGG: cau:Caur_1443 fumarate lyase. (472 aa)    
Predicted Functional Partners:
Cagg_1576
TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: cau:Caur_1882 succinate dehydrogenase/fumarate reductase cytochrome b subunit.
     
 0.960
Cagg_1577
KEGG: cau:Caur_1881 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
 
 
 0.949
Cagg_3355
Malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: amino acid-binding ACT domain protein; malic protein domain protein; malic protein NAD-binding; KEGG: cau:Caur_1614 malate dehydrogenase.
 
 
 0.946
Cagg_1578
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cau:Caur_1880 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
  
 
 0.924
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
    
 0.906
Cagg_1330
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cau:Caur_0178 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
     
 0.901
Cagg_1331
Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cau:Caur_0179 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
     
 0.901
Cagg_3782
KEGG: cau:Caur_2969 malate synthase; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family.
     
  0.900
Cagg_3738
KEGG: cau:Caur_3809 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
     
 0.837
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: cau:Caur_3348 argininosuccinate lyase.
     
0.830
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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