STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_2658PFAM: UbiA prenyltransferase; KEGG: cau:Caur_0843 UbiA prenyltransferase. (302 aa)    
Predicted Functional Partners:
Cagg_2633
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; KEGG: cau:Caur_2087 geranylgeranyl reductase.
  
 
 0.858
Cagg_2115
KEGG: cau:Caur_1232 hypothetical protein.
 
  
 0.739
Cagg_3520
KEGG: cau:Caur_2993 hypothetical protein.
  
     0.724
Cagg_1457
KEGG: cau:Caur_1711 hypothetical protein.
  
     0.663
Cagg_1996
PFAM: lipolytic protein G-D-S-L family; KEGG: cau:Caur_0944 GDSL family lipase.
 
     0.656
Cagg_3725
KEGG: cau:Caur_3728 hypothetical protein.
  
     0.649
Cagg_1022
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: cau:Caur_3332 heat repeat-containing PBS lyase.
  
     0.648
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
  0.627
Cagg_2046
KEGG: cau:Caur_1996 putative poly-gamma-glutamate biosynthesis (capsule formation)-like protein.
  
     0.625
Cagg_2568
KEGG: cau:Caur_1916 hypothetical protein.
 
   
 0.621
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.