STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_2829PFAM: Tetratricopeptide TPR_4; KEGG: cau:Caur_0712 tetratricopeptide TPR_4. (710 aa)    
Predicted Functional Partners:
Cagg_2827
KEGG: cau:Caur_0710 membrane protein-like protein.
 
     0.863
Cagg_2825
KEGG: cau:Caur_0708 hypothetical protein.
 
     0.840
Cagg_3374
KEGG: cau:Caur_0634 hypothetical protein.
  
    0.793
Cagg_0236
KEGG: cau:Caur_3374 transcriptional regulator-like protein.
  
    0.773
Cagg_0159
SH3 type 3 domain protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SH3 type 3 domain protein; KEGG: cau:Caur_3651 SH3 type 3 domain-containing protein.
  
     0.771
Cagg_3214
KEGG: cau:Caur_0508 hypothetical protein.
  
     0.771
Cagg_3469
KEGG: cau:Caur_2544 hypothetical protein.
  
     0.770
Cagg_3448
KEGG: cau:Caur_0558 hypothetical protein.
  
     0.769
Cagg_2975
PFAM: peptidase domain protein; KEGG: cau:Caur_2417 peptidase domain-containing protein.
  
     0.768
Cagg_1257
KEGG: cau:Caur_2558 TPR repeat-containing protein.
  
     0.767
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.