STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_3051PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: cau:Caur_2342 heat repeat-containing PBS lyase. (304 aa)    
Predicted Functional Partners:
Cagg_3052
PFAM: LmbE family protein; KEGG: cau:Caur_2341 LmbE family protein.
 
    0.935
Cagg_3053
PFAM: Methicillin resistance protein; KEGG: cau:Caur_2340 methicillin resistance protein.
       0.826
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.807
Cagg_2739
KEGG: cau:Caur_0811 zinc finger SWIM domain-containing protein.
  
     0.759
Cagg_3101
KEGG: cau:Caur_0435 hypothetical protein.
  
     0.758
Cagg_2989
PFAM: protein of unknown function DUF177; KEGG: cau:Caur_2404 hypothetical protein.
  
     0.751
Cagg_3485
PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_4116 allergen V5/TPX-1 family protein.
  
     0.750
Cagg_3474
KEGG: cau:Caur_2549 glycosyl transferase family protein.
  
     0.740
Cagg_0136
PFAM: peptidase C60 sortase A and B; KEGG: cau:Caur_3249 peptidase C60 sortase A and B.
  
     0.724
Cagg_2394
KEGG: cau:Caur_1679 hypothetical protein.
  
     0.721
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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