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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_3203KEGG: cau:Caur_0519 hypothetical protein. (142 aa)    
Predicted Functional Partners:
Cagg_3204
KEGG: cau:Caur_0518 hypothetical protein.
 
     0.959
Cagg_3205
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cau:Caur_0517 alpha amylase catalytic region.
       0.826
Cagg_3206
KEGG: cau:Caur_0516 hypothetical protein.
       0.460
Cagg_3260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cau:Caur_2439 ABC transporter related.
  
     0.440
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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