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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_3206KEGG: cau:Caur_0516 hypothetical protein. (234 aa)    
Predicted Functional Partners:
Cagg_2449
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cau:Caur_0987 phage SPO1 DNA polymerase-related protein.
     
  0.900
Cagg_3408
KEGG: cau:Caur_0584 heat repeat-containing PBS lyase.
  
     0.623
Cagg_1733
KEGG: cau:Caur_0907 ATPase involved in chromosome partitioning-like protein.
  
     0.621
Cagg_2871
KEGG: cau:Caur_0736 hypothetical protein.
  
     0.605
Cagg_3687
KEGG: cau:Caur_3008 hypothetical protein.
  
     0.589
Cagg_0871
KEGG: cau:Caur_3506 hypothetical protein.
 
    0.582
Cagg_3207
PFAM: alpha/beta hydrolase fold; KEGG: cau:Caur_0515 alpha/beta hydrolase fold-containing protein.
       0.580
Cagg_2378
KEGG: cau:Caur_1645 hypothetical protein.
  
     0.579
Cagg_0189
PFAM: protein of unknown function DUF1332; KEGG: cau:Caur_2749 hypothetical protein.
  
     0.574
Cagg_1634
PFAM: peptidase M22 glycoprotease; KEGG: cau:Caur_1990 peptidase M22 glycoprotease.
  
    0.567
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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