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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_3208TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cau:Caur_0514 SAF domain-containing protein. (351 aa)    
Predicted Functional Partners:
Cagg_3209
PFAM: response regulator receiver; KEGG: rca:Rcas_1683 response regulator receiver protein.
  
  
 0.943
Cagg_3211
PFAM: type II secretion system protein; KEGG: cau:Caur_0511 type II secretion system protein.
  
  
 0.899
Cagg_3212
PFAM: type II secretion system protein; KEGG: cau:Caur_0510 type II secretion system protein.
  
  
 0.885
Cagg_1915
PFAM: Flp/Fap pilin component; KEGG: cau:Caur_1302 Flp/Fap pilin component.
  
  
 0.831
Cagg_1830
Response regulator receiver modulated diguanylate cyclase; KEGG: cau:Caur_1952 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
  
    0.789
Cagg_0553
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: cau:Caur_3534 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
    0.762
Cagg_0054
PFAM: TadE family protein; KEGG: cau:Caur_3903 TadE family protein.
  
  
 0.758
Cagg_1737
PFAM: TadE family protein; KEGG: cau:Caur_0911 TadE family protein.
  
  
 0.758
Cagg_2419
PFAM: cyclic nucleotide-binding; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: cau:Caur_1013 stage II sporulation E family protein.
   
    0.711
Cagg_3210
PFAM: type II secretion system protein E; KEGG: cau:Caur_0512 type II secretion system protein E.
  
  
 0.689
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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