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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_3209PFAM: response regulator receiver; KEGG: rca:Rcas_1683 response regulator receiver protein. (416 aa)    
Predicted Functional Partners:
Cagg_3211
PFAM: type II secretion system protein; KEGG: cau:Caur_0511 type II secretion system protein.
 
  
 0.990
Cagg_3212
PFAM: type II secretion system protein; KEGG: cau:Caur_0510 type II secretion system protein.
 
  
 0.976
Cagg_3210
PFAM: type II secretion system protein E; KEGG: cau:Caur_0512 type II secretion system protein E.
 
  
 0.944
Cagg_3208
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cau:Caur_0514 SAF domain-containing protein.
  
  
 0.943
Cagg_1915
PFAM: Flp/Fap pilin component; KEGG: cau:Caur_1302 Flp/Fap pilin component.
 
  
 0.916
Cagg_3213
PFAM: protein of unknown function DUF192; KEGG: cau:Caur_0509 hypothetical protein.
 
     0.885
Cagg_1737
PFAM: TadE family protein; KEGG: cau:Caur_0911 TadE family protein.
 
  
 0.842
Cagg_2982
PFAM: type II secretion system protein E; KEGG: cau:Caur_2411 type II secretion system protein E.
 
  
 0.832
Cagg_0054
PFAM: TadE family protein; KEGG: cau:Caur_3903 TadE family protein.
 
  
 0.827
Cagg_1735
PFAM: SAF domain protein; KEGG: cau:Caur_0909 SAF domain-containing protein.
  
  
 0.800
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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