STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_3335PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rca:Rcas_4176 methyltransferase type 11. (259 aa)    
Predicted Functional Partners:
Cagg_1643
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cau:Caur_1048 methyltransferase type 11.
  
     0.508
Cagg_3287
PFAM: TPR repeat-containing protein; transcriptional activator domain; Tetratricopeptide TPR_4; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: rca:Rcas_3701 SARP family transcriptional regulator.
  
     0.457
Cagg_3279
PA14 domain protein; SMART: low-density lipoprotein receptor YWTD repeat; PA14 domain protein; KEGG: rca:Rcas_3703 dystroglycan-type cadherin domain-containing protein.
  
     0.441
Cagg_0564
KEGG: rca:Rcas_0080 hypothetical protein.
  
     0.411
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.