STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_3382KEGG: cau:Caur_0626 hypothetical protein. (411 aa)    
Predicted Functional Partners:
Cagg_3384
KEGG: cau:Caur_0624 transmembrane prediction.
 
 
 0.997
Cagg_3385
PFAM: Polysulphide reductase NrfD; KEGG: cau:Caur_0623 polysulphide reductase NrfD.
 
 
 0.997
Cagg_3386
KEGG: cau:Caur_0622 Fe-S-cluster-containing hydrogenase components 1-like protein.
 
 
 0.997
Cagg_3383
KEGG: cau:Caur_0625 hypothetical protein.
 
 
 0.993
Cagg_1527
KEGG: cau:Caur_2136 Fe-S-cluster-containing hydrogenase components 1-like protein.
 
 
 0.992
Cagg_3387
KEGG: cau:Caur_0621 hypothetical protein.
 
 
 0.987
tsf
Translation elongation factor EFTs/EF1B dimerisation; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
   
 0.986
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 0.969
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 0.969
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 0.969
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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