Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0016Putative orphan protein; No homology to any previously reported sequences. (223 aa)    
Predicted Functional Partners:
PSHAa0627
Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.707
PSHAa0613
Homologs of previously reported genes of unknown function.
  
     0.698
PSHAa1833
Homologs of previously reported genes of unknown function.
  
     0.689
PSHAa0755
Homologs of previously reported genes of unknown function.
  
     0.679
trkH
Potassium transport protein, requires TrkE (Trk family); Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
       0.651
PSHAa0817
Homologs of previously reported genes of unknown function.
 
  
 0.634
cheV
Chemotaxis protein; Function of strongly homologous gene; regulator.
 
  
 0.630
PSHAa0754
Homologs of previously reported genes of unknown function.
  
     0.627
cheZ
Chemotaxis protein cheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
    0.601
fliS
Putative flagellar biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
  
 0.598
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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