Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0041Homologs of previously reported genes of unknown function. (137 aa)    
Predicted Functional Partners:
PSHAa0042
Homologs of previously reported genes of unknown function.
  
  
 0.995
speE-2
Putative spermine/spermidine synthase family protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
       0.751
PSHAa0043
Homologs of previously reported genes of unknown function.
       0.749
PSHAa0044
Homologs of previously reported genes of unknown function.
       0.711
PSHAa0039
Conserved protein of unknown function, putative integral inner membrane protein; Homologs of previously reported genes of unknown function; membrane component.
       0.705
pspA
Putative negative regulatory gene for the psp operon, phage shock protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
  
 0.668
pspA-2
Negative regulatory gene for the psp opreon, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
  
 0.668
PSHAa0038
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.508
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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