Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0042Homologs of previously reported genes of unknown function. (230 aa)    
Predicted Functional Partners:
PSHAa0041
Homologs of previously reported genes of unknown function.
  
  
 0.995
speE-2
Putative spermine/spermidine synthase family protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.884
PSHAa0039
Conserved protein of unknown function, putative integral inner membrane protein; Homologs of previously reported genes of unknown function; membrane component.
 
     0.880
PSHAa0654
Homologs of previously reported genes of unknown function.
    
 
 0.806
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
    
 
 0.799
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
    
 
 0.799
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
    
 
 0.799
PSHAa0137
Putative potassium channel; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
     0.780
PSHAa0043
Homologs of previously reported genes of unknown function.
       0.773
pspB
Regulatory gene for expression of the psp operon with PspC, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.768
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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