STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0050Homologs of previously reported genes of unknown function. (379 aa)    
Predicted Functional Partners:
PSHAa0051
Homologs of previously reported genes of unknown function.
       0.875
PSHAa0052
Hypothetical tryptophan-rich sensor protein; Function of strongly homologous gene; receptor.
       0.800
PSHAa0053
Putative transcriptional regulator (LRP/AsnC family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.771
PSHAa0055
Putative pyridoxal phosphate dependent enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.540
PSHAa0054
Homologs of previously reported genes of unknown function.
       0.471
PSHAa1722
Putative aminoacyl-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
 
     0.439
PSHAa0049
Homologs of previously reported genes of unknown function.
 
     0.429
PSHAa0429
Homologs of previously reported genes of unknown function.
  
     0.426
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.