Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0051Homologs of previously reported genes of unknown function. (456 aa)    
Predicted Functional Partners:
PSHAa0050
Homologs of previously reported genes of unknown function.
       0.851
PSHAa0052
Hypothetical tryptophan-rich sensor protein; Function of strongly homologous gene; receptor.
       0.785
PSHAa0053
Putative transcriptional regulator (LRP/AsnC family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.721
PSHAa0054
Homologs of previously reported genes of unknown function.
       0.482
PSHAa0055
Putative pyridoxal phosphate dependent enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.482
PSHAa0016
Putative orphan protein; No homology to any previously reported sequences.
  
     0.478
rnr
RNase R, 3'-5' exoribonuclease; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.426
rnr-2
Cold-shock RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.426
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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