Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa0108Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (691 aa)    
Predicted Functional Partners:
PSHAa2961
Homologs of previously reported genes of unknown function.
 
  
 0.661
PSHAb0286
Putative TonB dependent outer membrane receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
  
 0.644
PSHAa0139
Homologs of previously reported genes of unknown function.
  
     0.634
PSHAa1242
Putative orphan protein; No homology to any previously reported sequences.
  
   
 0.603
PSHAa0187
Homologs of previously reported genes of unknown function.
  
  
 0.584
irgA
Iron-regulated outer membrane virulence protein homolog; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
 
  
 0.584
PSHAb0254
Putative Outer membrane TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
  
 0.562
PSHAa0524
Homologs of previously reported genes of unknown function.
  
     0.527
PSHAa1702
Homologs of previously reported genes of unknown function.
  
     0.521
dbpA
Putative ATP-dependent RNA helicase; Function of strongly homologous gene; enzyme.
       0.504
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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