Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0134Homologs of previously reported genes of unknown function. (427 aa)    
Predicted Functional Partners:
PSHAb0167
Putative GGDEF sensory box protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.990
PSHAa0654
Homologs of previously reported genes of unknown function.
 
 
 0.988
PSHAb0077
Putative protein with GGDEF domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
 0.985
PSHAa2011
Homologs of previously reported genes of unknown function.
  
 0.984
PSHAa1211
Homologs of previously reported genes of unknown function.
 
 0.983
PSHAa0644
Putative two-component response regulator with GGDEF domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.982
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
 
 0.974
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
 
 
 0.969
PSHAa2620
Putative two-component response regulator; Function of strongly homologous gene; regulator.
 
 0.968
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
 
 0.965
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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