STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0165Homologs of previously reported genes of unknown function. (181 aa)    
Predicted Functional Partners:
glnL
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.762
glnG
Response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
       0.753
PSHAa0162
Homologs of previously reported genes of unknown function.
       0.704
PSHAa2522
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.623
PSHAa0024
Homologs of previously reported genes of unknown function.
  
    0.621
PSHAa1844
Putative Cbb3-type cytochrome oxidase, subunit 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.601
glnA
Glutamine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.599
pilQ
Putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.584
PSHAa0240
Putative general secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.575
PSHAa1962
Homologs of previously reported genes of unknown function.
  
     0.570
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.