STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0243Putative orphan protein; No homology to any previously reported sequences; Belongs to the UPF0149 family. (195 aa)    
Predicted Functional Partners:
gspI
Putative general secretion pathway protein I [precursor]; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.837
gspJ
Putative general secretion pathway protein J [Precursor]; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.837
gspK
Putative general secretion pathway protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.837
PSHAa0240
Putative general secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.837
PSHAa0241
Putative general secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.837
PSHAa0242
Putative general secretion pathway protein N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.837
gspG
Putative general secretion pathway protein G [Precursor]; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.774
gspH
Putative general secretion pathway protein H precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.705
exeD
General secretion pathway protein D; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.692
exeE
General secretion pathway protein E (Type II traffic warden ATPase); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.692
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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