Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa0246Homologs of previously reported genes of unknown function; carrier. (476 aa)    
Predicted Functional Partners:
PSHAa1843
Putative Cbb3-type cytochrome oxidase, cytochrome c subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; carrier.
 
  
 0.964
PSHAa1845
Putative cytochrome c oxidase, subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.949
PSHAa1842
Cytochrome c oxidase, cbb3-type, subunit I; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.914
rdoA
Conserved hypothetical protein, putative homoserine kinase type II; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.795
PSHAa1849
Homologs of previously reported genes of unknown function.
 
     0.780
dsbA
Periplasmic protein, disulfide bond formation; Function experimentally demonstrated in the studied organism; enzyme.
  
    0.763
PSHAa1846
Homologs of previously reported genes of unknown function.
 
    0.751
porA
Periplasmic protein, disulfide bond formation; Function experimentally demonstrated in the studied organism; enzyme.
  
    0.744
hemN
Coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.737
PSHAa0244
Putative orphan protein; No homology to any previously reported sequences.
       0.706
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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