Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0284Homologs of previously reported genes of unknown function. (179 aa)    
Predicted Functional Partners:
PSHAa0283
Putative transport protein (MFS family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
     0.746
PSHAa0285
Putative cytochrome c4 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; carrier.
       0.724
PSHAa0561
Homologs of previously reported genes of unknown function; Belongs to the UPF0149 family.
  
     0.630
PSHAa0286
Homologs of previously reported genes of unknown function; enzyme.
       0.613
PSHAa0126
Putative hydrolase, contains a phosphatase-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.526
mrcB
Murein polymerase, bifunctional murein transglycosylase and transpeptidase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
  
     0.520
rnt
RNase T, degrades tRNA, has exonuclease and ssDNAse activity; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
  
     0.448
PSHAa2465
Homologs of previously reported genes of unknown function.
  
     0.432
gcvR
Transcriptional repressor for cleavage of glycine; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.423
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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