STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyDBPeptidyl-prolyl cis-trans isomerase, FkbP family; Function of strongly homologous gene; enzyme. (164 aa)    
Predicted Functional Partners:
PSHAa0290
Homologs of previously reported genes of unknown function.
       0.852
mltD
Putative membrane-bound lytic murein transglycosylase D [Precursor]; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.813
fkpB
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); Function of strongly homologous gene; enzyme.
  
   
 0.775
PSHAa0289
Homologs of previously reported genes of unknown function.
       0.773
PSHAa0288
Putative orphan protein; No homology to any previously reported sequences.
       0.767
PSHAa0294
Putative orphan protein; No homology to any previously reported sequences.
       0.750
rpsB
30S ribosomal subunit protein S2; Function of homologous gene experimentally demonstrated in an other organism; structural protein; Belongs to the universal ribosomal protein uS2 family.
   
   0.740
PSHAa0291
Putative glucose/ribitol dehydrogenase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
    0.713
rpsC
30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.702
ureG
Urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
    
 
 0.544
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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