Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0308Homologs of previously reported genes of unknown function. (168 aa)    
Predicted Functional Partners:
gcvR
Transcriptional repressor for cleavage of glycine; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.738
pstC
Putative phosphate ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.665
pstA
Putative phosphate transport system permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.649
gcvP
Glycine cleavage complex protein P, glycine decarboxylase, PLP-dependent; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
  
 0.437
PSHAa2909
Homologs of previously reported genes of unknown function; Belongs to the UPF0270 family.
 
     0.429
pstB
Phosphate import ATP-binding protein pstB(Phosphate-transporting ATPase)(ABC phosphate transporter); Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
       0.427
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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