STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0331Homologs of previously reported genes of unknown function. (158 aa)    
Predicted Functional Partners:
PSHAa0332
Putative orphan protein; No homology to any previously reported sequences.
       0.868
PSHAa0333
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.853
ampH
Putative beta-lactamase, penicillin-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.780
PSHAa0329
Putative 5-carboxymethyl-2-hydroxymuconate delta isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.738
PSHAa0330
Putative orphan protein; Doubtful CDS.
       0.658
PSHAa0334
Homologs of previously reported genes of unknown function.
       0.655
PSHAa0336
Putative histone deacetylase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
    0.605
PSHAa0504
Homologs of previously reported genes of unknown function.
  
    0.492
purF
Amidophosphoribosyltransferase (PRPP amidotransferase); Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
      
 0.470
yihI
Conserved protein of unknown function; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
   
 0.418
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.