Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PSHAa0610 | rpoA | PSHAa0610 | PSHAa2806 | Homologs of previously reported genes of unknown function. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.928 |
| PSHAa0610 | rpoB | PSHAa0610 | PSHAa0222 | Homologs of previously reported genes of unknown function. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.909 |
| PSHAa0610 | rpoC | PSHAa0610 | PSHAa0223 | Homologs of previously reported genes of unknown function. | RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.886 |
| PSHAa0610 | rpoD | PSHAa0610 | PSHAa0349 | Homologs of previously reported genes of unknown function. | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.940 |
| PSHAa0610 | rpoZ | PSHAa0610 | PSHAa2791 | Homologs of previously reported genes of unknown function. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.881 |
| dnaG | nusA | PSHAa0350 | PSHAa0996 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Transcription elongation protein (N utilization substance protein A) (L factor); Participates in both transcription termination and antitermination. | 0.554 |
| dnaG | prmA | PSHAa0350 | PSHAa0348 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Methylation of 50S ribosomal subunit protein L11 (ribosomal protein L11 methyltransferase); Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.729 |
| dnaG | rpoA | PSHAa0350 | PSHAa2806 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.616 |
| dnaG | rpoB | PSHAa0350 | PSHAa0222 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.435 |
| dnaG | rpoD | PSHAa0350 | PSHAa0349 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.982 |
| nusA | dnaG | PSHAa0996 | PSHAa0350 | Transcription elongation protein (N utilization substance protein A) (L factor); Participates in both transcription termination and antitermination. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.554 |
| nusA | rpoA | PSHAa0996 | PSHAa2806 | Transcription elongation protein (N utilization substance protein A) (L factor); Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
| nusA | rpoB | PSHAa0996 | PSHAa0222 | Transcription elongation protein (N utilization substance protein A) (L factor); Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
| nusA | rpoC | PSHAa0996 | PSHAa0223 | Transcription elongation protein (N utilization substance protein A) (L factor); Participates in both transcription termination and antitermination. | RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.987 |
| nusA | rpoD | PSHAa0996 | PSHAa0349 | Transcription elongation protein (N utilization substance protein A) (L factor); Participates in both transcription termination and antitermination. | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.914 |
| nusA | rpoZ | PSHAa0996 | PSHAa2791 | Transcription elongation protein (N utilization substance protein A) (L factor); Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.937 |
| prmA | dnaG | PSHAa0348 | PSHAa0350 | Methylation of 50S ribosomal subunit protein L11 (ribosomal protein L11 methyltransferase); Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.729 |
| prmA | rpoD | PSHAa0348 | PSHAa0349 | Methylation of 50S ribosomal subunit protein L11 (ribosomal protein L11 methyltransferase); Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.810 |
| rpoA | PSHAa0610 | PSHAa2806 | PSHAa0610 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Homologs of previously reported genes of unknown function. | 0.928 |
| rpoA | dnaG | PSHAa2806 | PSHAa0350 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.616 |
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