Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa0383Putative Pilus biogenesis protein tapA precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein. (131 aa)    
Predicted Functional Partners:
ppdD
Putative prepilin peptidase dependent protein D; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the N-Me-Phe pilin family.
 
  
 
0.964
syd
Syd protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.440
PSHAa0642
Putative orphan protein; No homology to any previously reported sequences.
  
     0.426
PSHAb0336
Homologs of previously reported genes of unknown function.
  
     0.400
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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