Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa0394Homologs of previously reported genes of unknown function. (198 aa)    
Predicted Functional Partners:
yfiQ
Putative acyl-CoA synthetase, NAD(P)-binding, ATP-binding; Function of strongly homologous gene; enzyme.
      0.602
PSHAa1719
Phosphatidylserine synthase; Function of strongly homologous gene; enzyme.
 
      0.571
PSHAa1638
Homologs of previously reported genes of unknown function.
  
     0.527
PSHAa2313
Putative GlpG protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
     0.526
PSHAb0349
Putative TonB-dependent receptor protease/peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the peptidase M16 family.
  
     0.473
atpI
Membrane-bound ATP synthase subunit, F1-F0-type proton-ATPase; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
  
     0.434
sdhD
Putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
     0.415
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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