STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0397Putative orphan protein; No homology to any previously reported sequences. (260 aa)    
Predicted Functional Partners:
mscS
Putative mechanosensitive channel protein (MscS family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.819
PSHAa0851
Homologs of previously reported genes of unknown function.
  
     0.678
PSHAa0398
Putative polysaccharide export family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.674
PSHAa1621
Putative TonB-dependent receptor protein with OmpA-like transmembrane domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; leader peptide; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
     0.554
PSHAb0165
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.500
PSHAa0476
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.499
bhbD
3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.498
PSHAa0400
Putative aminotransferase, DegT/DnrJ/EryC1/StrS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the DegT/DnrJ/EryC1 family.
       0.498
gspC
Putative general secretion pathway protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.487
PSHAa0344
Homologs of previously reported genes of unknown function.
  
     0.477
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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