Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0398Putative polysaccharide export family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (327 aa)    
Predicted Functional Partners:
PSHAa1780
Putative Exopolysaccharide biosynthesis protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.981
wcaJ
UDP-glucose lipid carrier transferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.917
PSHAa0400
Putative aminotransferase, DegT/DnrJ/EryC1/StrS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.799
bhbD
3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.773
mscS
Putative mechanosensitive channel protein (MscS family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.676
PSHAb0237
Putative glycosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
  
 0.676
PSHAa0397
Putative orphan protein; No homology to any previously reported sequences.
       0.674
PSHAa0183
Putative outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
 0.644
cpsB
Putative mannose-1-phosphate guanyltransferase, colanic acid synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.633
PSHAa2218
Homologs of previously reported genes of unknown function; Belongs to the UPF0337 (CsbD) family.
   
    0.515
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.