STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0405Putative orphan protein; No homology to any previously reported sequences; enzyme. (181 aa)    
Predicted Functional Partners:
PSHAa0404
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
     0.991
PSHAa0402
Putative orphan protein; No homology to any previously reported sequences.
 
   
 0.955
PSHAa0403
Putative orphan protein; Doubtful CDS.
 
   
 0.953
PSHAa0401
Putative polysaccharide biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.445
PSHAa0406
Putative orphan protein; No homology to any previously reported sequences; membrane component.
     
 0.417
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.