Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa0406Putative orphan protein; No homology to any previously reported sequences; membrane component. (522 aa)    
Predicted Functional Partners:
PSHAa1780
Putative Exopolysaccharide biosynthesis protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.720
wcaJ
UDP-glucose lipid carrier transferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.634
hsdM
Putative type I restriction-modification system, M subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
   
    0.520
cpsB
Putative mannose-1-phosphate guanyltransferase, colanic acid synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.460
PSHAa0402
Putative orphan protein; No homology to any previously reported sequences.
  
    0.457
PSHAa0403
Putative orphan protein; Doubtful CDS.
  
    0.457
PSHAa0405
Putative orphan protein; No homology to any previously reported sequences; enzyme.
     
 0.416
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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