Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0407Putative orphan protein; No homology to any previously reported sequences; Belongs to the DnaA family. (161 aa)    
Predicted Functional Partners:
PSHAa0411
Putative orphan protein; No homology to any previously reported sequences.
 
     0.975
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.906
PSHAa1350
Homologs of previously reported genes of unknown function; membrane component.
 
      0.900
PSHAa0412
Putative orphan protein; No homology to any previously reported sequences.
 
     0.777
PSHAa0416
Homologs of previously reported genes of unknown function.
 
 
 0.774
PSHAa0413
Putative orphan protein; No homology to any previously reported sequences.
 
     0.740
PSHAa0417
Homologs of previously reported genes of unknown function.
 
 
 0.580
PSHAa0408
Putative orphan protein; No homology to any previously reported sequences.
       0.560
PSHAa0409
Putative orphan protein; No homology to any previously reported sequences.
       0.560
PSHAa0415
Homologs of previously reported genes of unknown function.
  
     0.495
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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