STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0411Putative orphan protein; No homology to any previously reported sequences. (109 aa)    
Predicted Functional Partners:
PSHAa0407
Putative orphan protein; No homology to any previously reported sequences; Belongs to the DnaA family.
 
     0.975
PSHAa0412
Putative orphan protein; No homology to any previously reported sequences.
 
     0.948
PSHAa0413
Putative orphan protein; No homology to any previously reported sequences.
 
     0.947
PSHAa0414
Homologs of previously reported genes of unknown function.
 
     0.901
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.855
PSHAa0416
Homologs of previously reported genes of unknown function.
 
  
 0.783
PSHAa0415
Homologs of previously reported genes of unknown function.
 
     0.743
PSHAa0417
Homologs of previously reported genes of unknown function.
 
  
 0.675
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.