STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0455Homologs of previously reported genes of unknown function. (225 aa)    
Predicted Functional Partners:
PSHAa0457
Homologs of previously reported genes of unknown function.
 
     0.949
PSHAa0458
Putative protozoan/cyanobacterial globin family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
     0.946
PSHAa0456
Putative HAMP domain/GGDEF domain/EAL domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
     0.870
PSHAa1477
Probable nitrite reductase (EC 1.7.99.3); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the multicopper oxidase family.
   
 
 0.800
copA
Copper resistance protein A (CPx-type copper ATPase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.703
sseA
Putative 3-mercaptopyruvate sulfurtransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.584
PSHAa2069
Putative orphan protein; No homology to any previously reported sequences.
  
     0.532
mshD
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 11985966.
  
     0.512
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the SAICAR synthetase family.
     
 0.502
PSHAa0251
Putative orphan protein; No homology to any previously reported sequences.
  
     0.468
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.