Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0464Homologs of previously reported genes of unknown function. (809 aa)    
Predicted Functional Partners:
PSHAa2859
Homologs of previously reported genes of unknown function.
 
     0.775
PSHAa2494
Putative orphan protein; No homology to any previously reported sequences.
  
     0.747
PSHAa2185
Putative amidohydrolase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.737
PSHAa1696
Leucine aminopeptidase-related protein; Function of strongly homologous gene; enzyme.
  
     0.726
PSHAb0189
Homologs of previously reported genes of unknown function.
  
     0.703
PSHAa0866
Putative orphan protein; No homology to any previously reported sequences.
  
     0.694
PSHAb0171
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.674
PSHAa1568
Putative enzymatic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.630
PSHAb0063
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.630
fbp
Fructose-1,6-bisphosphatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.579
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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