Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0503Homologs of previously reported genes of unknown function. (169 aa)    
Predicted Functional Partners:
PSHAa2872
Cytochrome c oxidase, subunit II (partial); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.928
PSHAa0505
Homologs of previously reported genes of unknown function.
  
    0.869
PSHAa0504
Homologs of previously reported genes of unknown function.
       0.865
PSHAb0009
Putative copper resistance (CopC-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
  
 0.847
PSHAa2529
Ubiquinol-cytochrome c reductase, cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.832
PSHAa2530
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.825
PSHAa2864
Putative SCO1/SenC family protein (copper-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
   
 0.792
PSHAa2660
Homologs of previously reported genes of unknown function.
  
  
 0.750
pspC
Putative phage shock protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.733
pspA
Putative negative regulatory gene for the psp operon, phage shock protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.728
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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