STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0504Homologs of previously reported genes of unknown function. (328 aa)    
Predicted Functional Partners:
PSHAa0505
Homologs of previously reported genes of unknown function.
       0.868
PSHAa0503
Homologs of previously reported genes of unknown function.
       0.865
pspC
Putative phage shock protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.731
pspA
Putative negative regulatory gene for the psp operon, phage shock protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.727
PSHAa0502
Homologs of previously reported genes of unknown function; membrane component.
       0.558
PSHAa0331
Homologs of previously reported genes of unknown function.
  
    0.492
PSHAa2607
Homologs of previously reported genes of unknown function.
  
     0.478
PSHAa0960
Homologs of previously reported genes of unknown function.
  
     0.401
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.