Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0505Homologs of previously reported genes of unknown function. (256 aa)    
Predicted Functional Partners:
PSHAa0503
Homologs of previously reported genes of unknown function.
  
    0.869
PSHAa0504
Homologs of previously reported genes of unknown function.
       0.868
pspA
Putative negative regulatory gene for the psp operon, phage shock protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
    0.763
pspC
Putative phage shock protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.731
bamC
Putative lipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.627
PSHAa1949
Homologs of previously reported genes of unknown function.
  
    0.623
PSHAa0125
Homologs of previously reported genes of unknown function.
  
     0.612
PSHAa2432
Homologs of previously reported genes of unknown function.
  
     0.597
PSHAa1896
Homologs of previously reported genes of unknown function.
  
     0.581
PSHAa0719
Homologs of previously reported genes of unknown function.
  
     0.571
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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