Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa0506Homologs of previously reported genes of unknown function. (295 aa)    
Predicted Functional Partners:
PSHAa0507
Homologs of previously reported genes of unknown function.
       0.868
PSHAa1833
Homologs of previously reported genes of unknown function.
  
     0.773
PSHAa0755
Homologs of previously reported genes of unknown function.
  
     0.771
PSHAa0754
Homologs of previously reported genes of unknown function.
  
     0.757
PSHAa0756
Putative orphan protein; No homology to any previously reported sequences.
  
     0.749
PSHAa0761
Homologs of previously reported genes of unknown function.
  
     0.748
PSHAa0613
Homologs of previously reported genes of unknown function.
  
     0.746
PSHAa2312
Putative orphan protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.738
PSHAa0242
Putative general secretion pathway protein N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.736
mshD
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 11985966.
  
     0.736
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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